Spatial structure of soymorphin-6 molecule

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Abstract

By the method of the theoretic conformational analysis the conformational capabilities of the soymorphin-6 (Tyr1-Pro2-Phe3-Val4-Val5-Asn6-NH2) molecule were studied. The potential energy of this molecule is given as the sum of nonvalent, electrostatic and torsional interactions and the energy of hydrogen bonds. Low-energy conformations of the soymorphin-6 molecule, the values of the dihedral angles of the main and side chains of amino acid residues that make up the molecules are found, the energy of intra- and inter-residual interactions is estimated. It is shown that the spatial structure of the soymorphin-6 molecule can be represented by eight conformations. The results obtained can be used to study the structure and structural-functional organization of the soymorphin molecules.

About the authors

L. N Agaeva

Baku State University

Email: leylanamig@mail.ru
Baku, Azarbaycan

A. A Abdinova

Azerbaijan State Pedagogical University

Baku, Azarbaycan

S. R Akhmedova

Azerbaijan Technical University

Baku, Azarbaycan

N. F Akhmedov

Baku State University

Baku, Azarbaycan

N. A Akhmedov

Baku State University

Baku, Azarbaycan

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